MolNFT v1 · #121418 · protein
Rifampin phosphotransferase G527Y mutant from listeria monocytogenes
5HV2 · Phosphoenolpyruvate synthase: “Rifampin phosphotransferase G527Y mutant from listeria monocytogenes”. X-ray diffraction, 6 pockets (best druggability 0.80). MolNFT v1 #121418 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5HV2
- Type
- protein
- Length
- 840 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoenolpyruvate synthase
- UniProt
- A0A0S2YLC8
- Pockets
- 6 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoenolpyruvate synthase | protein | 840 | 45% helix, 16% strand | A0A0S2YLC8 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 863 | 0.80 | 0.82 | 89 | empty |
| 2 | 707 | 0.66 | 0.74 | 70 | empty |
| 3 | 125 | 0.41 | 0.75 | 23 | empty |
| 4 | 89 | 0.41 | 0.78 | 22 | empty |
| 5 | 110 | 0.40 | 0.76 | 22 | empty |
Compared structures
- 5HV2 · Rifampin phosphotransferase G527Y mutant from Listeria monocytogenes · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0S2YLC8
- Elsewhere: RCSB PDB 5HV2 · PDBe 5HV2 · UniProt A0A0S2YLC8
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