MolNFT v1 · #12138 · protein

Fhud complexed with albomycin-delta 2

1K7S · Ferrichrome-binding periplasmic protein: “Fhud complexed with albomycin-delta 2”. X-ray diffraction, 1 ligand (ALB), 1 pocket (best druggability 0.33). MolNFT v1 #12138 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1K7S
Type: protein
Length: 262 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferrichrome-binding periplasmic protein
UniProt: P07822
Ligands: ALB
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
N	Ferrichrome-binding periplasmic protein	protein	262	43% helix, 18% strand	P07822

Ligands and binding sites

ALB · Delta-2-albomycin A1 · ligand · chains N

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.33	0.74	16	ALB

Compared structures

1K7S · FhuD complexed with albomycin-delta 2 · the same entry in another collection · chain N against N, TM-score 1.00
P07822 · AlphaFold monomer V2.0 prediction for IRON(3+)-hydroxamate-binding protein fhud (P07822) · a predicted model of the same protein · chain N against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07822
Elsewhere: RCSB PDB 1K7S · PDBe 1K7S · UniProt P07822

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