MolNFT v1 · #121378 · protein
Putative sugar kinases from arabidopsis thaliana in complex with ADP
5HTX · Putative xylulose kinase: “Putative sugar kinases from arabidopsis thaliana in complex with ADP”. X-ray diffraction, 1 ligand (ADP), 3 pockets (best druggability 0.60). MolNFT v1 #121378 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5HTX
- Type
- protein
- Length
- 424 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative xylulose kinase
- UniProt
- Q8L794
- Ligands
- ADP
- Pockets
- 3 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative xylulose kinase | protein | 424 | 36% helix, 23% strand | Q8L794 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 431 | 0.60 | 0.76 | 64 | empty |
| 2 | 130 | 0.50 | 0.80 | 21 | empty |
| 3 | 117 | 0.47 | 0.79 | 26 | ADP |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8L794
- Elsewhere: RCSB PDB 5HTX · PDBe 5HTX · UniProt Q8L794
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