MolNFT v1 · #121377 · protein

Putative sugar kinases from arabidopsis thaliana in complex with amppnp

5HTV · Putative xylulose kinase: “Putative sugar kinases from arabidopsis thaliana in complex with amppnp”. X-ray diffraction, 1 ligand (ANP), 3 pockets (best druggability 0.59). MolNFT v1 #121377 on GenesisL1: 3D structure, binding sites…

PDB: 5HTV
Type: protein
Length: 424 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative xylulose kinase
UniProt: Q8L794
Ligands: ANP
Pockets: 3 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative xylulose kinase	protein	424	36% helix, 23% strand	Q8L794

Ligands and binding sites

ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	427	0.59	0.75	69	empty
2	133	0.49	0.79	23	ANP
3	126	0.48	0.79	19	empty

Compared structures

5HTV · Putative sugar kinases from Arabidopsis thaliana in complex with AMPPNP · the same entry in another collection · chain A against A, TM-score 1.00
Q8L794 · AlphaFold monomer V2.0 prediction for D-ribulose kinase (Q8L794) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8L794
Elsewhere: RCSB PDB 5HTV · PDBe 5HTV · UniProt Q8L794

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