MolNFT v1 · #121375 · protein

Putative sugar kinases from arabidopsis thaliana in apo form

5HTR · Putative xylulose kinase: “Putative sugar kinases from arabidopsis thaliana in apo form”. X-ray diffraction, 4 pockets (best druggability 0.52). MolNFT v1 #121375 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HTR
Type: protein
Length: 424 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative xylulose kinase
UniProt: Q8L794
Pockets: 4 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative xylulose kinase	protein	424	35% helix, 23% strand	Q8L794

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	139	0.52	0.80	19	empty
2	248	0.50	0.75	46	empty
3	130	0.44	0.77	17	empty
4	138	0.44	0.76	28	empty

Compared structures

5HTR · Putative sugar kinases from Arabidopsis thaliana in apo form · the same entry in another collection · chain A against A, TM-score 1.00
Q8L794 · AlphaFold monomer V2.0 prediction for D-ribulose kinase (Q8L794) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8L794
Elsewhere: RCSB PDB 5HTR · PDBe 5HTR · UniProt Q8L794

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