MolNFT v1 · #121369 · protein

Putative sugar kinases from synechococcus elongatus PCC7942-D8A

5HTJ · Probable sugar kinase: “Putative sugar kinases from synechococcus elongatus PCC7942-D8A”. X-ray diffraction, 4 pockets (best druggability 0.65). MolNFT v1 #121369 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HTJ
Type: protein
Length: 419 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable sugar kinase
UniProt: Q31KC7
Pockets: 4 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable sugar kinase	protein	419	32% helix, 22% strand	Q31KC7

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	534	0.65	0.77	61	empty
2	109	0.42	0.77	16	empty
3	79	0.38	0.77	18	empty
4	52	0.27	0.74	15	empty

Compared structures

5HTJ · Putative sugar kinases from Synechococcus elongatus PCC7942-D8A · the same entry in another collection · chain A against A, TM-score 1.00
Q31KC7 · AlphaFold monomer V2.0 prediction for D-ribulose kinase (Q31KC7) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q31KC7
Elsewhere: RCSB PDB 5HTJ · PDBe 5HTJ · UniProt Q31KC7

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