MolNFT v1 · #12135 · protein
Crystal structure of rdgb- inosine triphosphate pyrophosphatase from E. COLI
1K7K · Hypothetical protein yggv: “Crystal structure of rdgb- inosine triphosphate pyrophosphatase from E. COLI”. X-ray diffraction, 1 pocket (best druggability 0.59). MolNFT v1 #12135 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1K7K
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yggv
- UniProt
- P52061
- Pockets
- 1 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yggv | protein | 207 | 39% helix, 23% strand | P52061 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 301 | 0.59 | 0.78 | 54 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 1K7K · crystal structure of RdgB- inosine triphosphate pyrophosphatase from E. coli · the same entry in another collection · chain A against A, TM-score 1.00
- P52061 · AlphaFold monomer V2.0 prediction for DITP/XTP pyrophosphatase (P52061) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52061
- Elsewhere: RCSB PDB 1K7K · PDBe 1K7K · UniProt P52061
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