MolNFT v1 · #121278 · protein
Crystal structure of ABC transporter solute binding protein B1G1H7 from burkholderia graminis C4D1M, target efi-511179, in complex with D-arabinose
5HQJ · Periplasmic binding PROTEIN/LACI transcriptional regulator: “Crystal structure of ABC transporter solute binding protein B1G1H7 from burkholderia graminis C4D1M, target…”. X-ray diffraction, 2 ligands (64K, CL), 1 pocket (best…
- PDB
- 5HQJ
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic binding PROTEIN/LACI transcriptional regulator
- UniProt
- B1G1H7
- Ligands
- 64K, CL
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic binding PROTEIN/LACI transcriptional regulator | protein | 289 | 43% helix, 19% strand | B1G1H7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.63 | 0.93 | 20 | 64K |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 5HQJ · Crystal structure of ABC transporter Solute Binding Protein B1G1H7 from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1G1H7
- Elsewhere: RCSB PDB 5HQJ · PDBe 5HQJ · UniProt B1G1H7
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