MolNFT v1 · #121259 · protein

Type II water soluble chl binding proteins

5HPZ · Water-soluble chlorophyll protein: “Type II water soluble chl binding proteins”. X-ray diffraction, 1 ligand (68G), 2 pockets (best druggability 0.76). MolNFT v1 #121259 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HPZ
Type: protein
Length: 350 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Water-soluble chlorophyll protein
UniProt: Q8H0F0
Ligands: 68G
Pockets: 2 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Water-soluble chlorophyll protein	protein	175	3% helix, 38% strand	Q8H0F0

Ligands and binding sites

68G · 13'2-hydroxyl-Chlorophyll a · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1031	0.76	0.78	52	68G
2	101	0.33	0.72	26	empty

Interfaces

1 interface between chains.

A–B · 567 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5HPZ · type II water soluble Chl binding proteins · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8H0F0
Elsewhere: RCSB PDB 5HPZ · PDBe 5HPZ · UniProt Q8H0F0

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