MolNFT v1 · #12122 · protein
Crystal structure of EC1530, a putative oxygenase from escherichia COLI
1K77 · Hypothetical protein ygbm: “Crystal structure of EC1530, a putative oxygenase from escherichia COLI”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.44). MolNFT v1 #12122 on GenesisL1: 3D structure, binding sites…
- PDB
- 1K77
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein ygbm
- UniProt
- Q46891
- Ligands
- MG
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein ygbm | protein | 260 | 42% helix, 14% strand | Q46891 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- FMT · Formic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.44 | 0.79 | 21 | GOL, FMT |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 1K77 · Crystal Structure of EC1530, a Putative Oxygenase from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
- Q46891 · AlphaFold monomer V2.0 prediction for 2-oxo-tetronate isomerase (Q46891) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q46891
- Elsewhere: RCSB PDB 1K77 · PDBe 1K77 · UniProt Q46891
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