MolNFT v1 · #121214 · protein

The crystal structure of the MERS-cov macro domain with ADP-ribose

5HOL · ORF1A: “The crystal structure of the MERS-cov macro domain with ADP-ribose”. X-ray diffraction, 1 ligand (APR), 1 pocket (best druggability 0.60). MolNFT v1 #121214 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HOL
Type: protein
Length: 167 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ORF1A
UniProt: T2BBC3
Ligands: APR
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ORF1A	protein	167	38% helix, 21% strand	T2BBC3

Ligands and binding sites

APR · Adenosine-5-diphosphoribose · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	228	0.60	0.80	33	APR

Compared structures

5HOL · The crystal structure of the MERS-CoV macro domain with ADP-ribose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt T2BBC3
Elsewhere: RCSB PDB 5HOL · PDBe 5HOL · UniProt T2BBC3

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