MolNFT v1 · #121200 · protein
Crystal structure of cmet in complex with cmpd.
5HO6 · Hepatocyte growth factor receptor: “Crystal structure of cmet in complex with cmpd.”. X-ray diffraction, 1 ligand (63K), 2 pockets (best druggability 0.40). MolNFT v1 #121200 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5HO6
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hepatocyte growth factor receptor
- EC
- 2.7.10.1
- UniProt
- P08581
- Ligands
- 63K
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hepatocyte growth factor receptor (EC 2.7.10.1) | protein | 240 | 42% helix, 12% strand | P08581 |
Ligands and binding sites
- 63K · 1-(6-{[6-(4-fluorophenyl)[1,2,4]triazolo[4,3-b]pyridazin-3-yl]sulfanyl}-1,3-benzothiazol-2-yl)-3-[2-(morpholin-4-yl)ethyl]urea · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.40 | 0.77 | 24 | empty |
| 2 | 100 | 0.40 | 0.76 | 18 | 63K |
Compared structures
- 5HO6 · Crystal structure of cmet in complex with cmpd. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08581
- Elsewhere: RCSB PDB 5HO6 · PDBe 5HO6 · UniProt P08581
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