MolNFT v1 · #121189 · protein
Crystal structure of ppka
5HNV · Ppka N terminal: “Crystal structure of ppka”. X-ray diffraction, 2 ligands (ATP, MG), 2 pockets (best druggability 0.70). MolNFT v1 #121189 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5HNV
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ppka N terminal
- Ligands
- ATP, MG
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ppka N terminal | protein | 283 | 40% helix, 20% strand | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 392 | 0.70 | 0.82 | 40 | ATP, GOL |
| 2 | 108 | 0.37 | 0.74 | 18 | empty |
Compared structures
- 5HNV · Crystal structure of PpkA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5HNV · PDBe 5HNV
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