MolNFT v1 · #121134 · protein

Crystal structure of mamo protease domain from magnetospirillum magneticum (apo form)

5HM9: “Crystal structure of mamo protease domain from magnetospirillum magneticum (apo form)”. X-ray diffraction, 1 pocket (best druggability 0.39). MolNFT v1 #121134 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HM9
Type: protein
Length: 194 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mamo protease domain; POLY(UNK)
UniProt: Q2W8Q2
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 2 distinct chains · 11% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mamo protease domain	protein	189	11% helix, 50% strand	Q2W8Q2
C	POLY(UNK)	protein	5	0% helix, 40% strand	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.39	0.77	13	empty

Interfaces

1 interface between chains.

A–C · 334 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

5HM9 · Crystal structure of MamO protease domain from Magnetospirillum magneticum (apo form) · the same entry in another collection · chain A against A, TM-score 1.00
Q2W8Q2 · AlphaFold monomer V2.0 prediction for probable membrane transporter protein mamo (Q2W8Q2) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2W8Q2
Elsewhere: RCSB PDB 5HM9 · PDBe 5HM9 · UniProt Q2W8Q2

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