MolNFT v1 · #120954 · protein

Hexameric HIV-1 ca, apo form

5HGN · Capsid protein P24: “Hexameric HIV-1 ca, apo form”. X-ray diffraction, 1 pocket (best druggability 0.36). MolNFT v1 #120954 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HGN
Type: protein
Length: 205 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein P24
UniProt: P12493
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 60% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid protein P24	protein	205	60% helix, 3% strand	P12493

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.36	0.79	16	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

5HGN · Hexameric HIV-1 CA, apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P12493
Elsewhere: RCSB PDB 5HGN · PDBe 5HGN · UniProt P12493

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