MolNFT v1 · #120858 · protein

Crystal structure of shaft pilin spaa from lactobacillus rhamnosus gg - E269A mutant

5HDL · Cell surface protein spaa: “Crystal structure of shaft pilin spaa from lactobacillus rhamnosus gg - E269A mutant”. X-ray diffraction, 9 pockets (best druggability 0.53). MolNFT v1 #120858 on GenesisL1: 3D structure, binding sites…

PDB: 5HDL
Type: protein
Length: 795 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell surface protein spaa
UniProt: C7T9P4
Pockets: 9 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Cell surface protein spaa	protein	265	6% helix, 43% strand	C7T9P4

Pockets

9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	117	0.53	0.82	21	empty
2	198	0.51	0.77	31	empty
3	107	0.47	0.79	29	empty
4	107	0.39	0.75	18	empty
5	92	0.38	0.76	20	empty

Interfaces

1 interface between chains.

A–B · 817 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 isopeptide (isopeptide).

Compared structures

5HDL · Crystal structure of shaft pilin spaA from Lactobacillus rhamnosus GG - E269A mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7T9P4
Elsewhere: RCSB PDB 5HDL · PDBe 5HDL · UniProt C7T9P4

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