MolNFT v1 · #120804 · RNA
RNA primer-template complex with 2-methylimidazole-activated monomer analogue-3 binding sites
5HBY · RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)…: “RNA primer-template complex with 2-methylimidazole-activated monomer analogue-3 binding sites”. X-ray diffraction, 2 ligands (PZG, MG). MolNFT v1 #120804 on GenesisL1: 3D structure, binding…
- PDB
- 5HBY
- Type
- RNA
- Length
- 13 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3')
- Ligands
- PZG, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3') | rna | 13 | — | — |
Ligands and binding sites
- PZG · [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid · ligand · 2 copies · chains A
- MG · Magnesium ion · metal
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 modified (nucleotide modification).
Compared structures
- 5HBY · RNA primer-template complex with 2-methylimidazole-activated monomer analogue-3 binding… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5HBY · PDBe 5HBY
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