MolNFT v1 · #120766 · protein

Crystal structure of the N-terminal dcb-hus domain of T. terrestris SEC7

5HAS: “Crystal structure of the N-terminal dcb-hus domain of T. terrestris SEC7”. X-ray diffraction, 16 pockets (best druggability 0.76). MolNFT v1 #120766 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HAS
Type: protein
Length: 1,383 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SEC7
Pockets: 16 · best druggability 0.76

Structure

x-ray diffraction · 4 distinct chains · 69% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SEC7	protein	381	66% helix, 4% strand	—
B	SEC7	protein	381	67% helix, 4% strand	—
C	SEC7	protein	280	76% helix, 0% strand	—
D	SEC7	protein	341	69% helix, 4% strand	—

Pockets

16 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1155	0.76	0.78	104	empty
2	545	0.66	0.77	69	empty
3	359	0.61	0.77	40	empty
4	265	0.60	0.79	27	empty
5	124	0.59	0.84	14	empty

Interfaces

5 interfaces between chains.

B–C · 925 Å² buried · 4 hydrogen bonds · protein-protein
A–D · 914 Å² buried · 8 hydrogen bonds · protein-protein
A–B · 744 Å² buried · 2 hydrogen bonds · protein-protein
A–C · 414 Å² buried · 1 hydrogen bond · protein-protein
B–D · 284 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5HAS · Crystal structure of the N-terminal DCB-HUS domain of T. terrestris Sec7 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5HAS · PDBe 5HAS

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