MolNFT v1 · #120760 · protein
Structure of rickettsia bellii effector protein rickce
5HAM: “Structure of rickettsia bellii effector protein rickce”. X-ray diffraction, 7 pockets (best druggability 0.85). MolNFT v1 #120760 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5HAM
- Type
- protein
- Length
- 520 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rickce
- UniProt
- Q1RK35
- Pockets
- 7 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Rickce | protein | 260 | 56% helix, 12% strand | Q1RK35 |
Pockets
7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 412 | 0.85 | 0.93 | 54 | empty |
| 2 | 218 | 0.70 | 0.86 | 26 | empty |
| 3 | 209 | 0.65 | 0.84 | 48 | empty |
| 4 | 202 | 0.64 | 0.84 | 31 | empty |
| 5 | 181 | 0.54 | 0.79 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 2921 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 5HAM · Structure of Rickettsia bellii effector protein RickCE · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1RK35
- Elsewhere: RCSB PDB 5HAM · PDBe 5HAM · UniProt Q1RK35
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.