MolNFT v1 · #120726 · protein
Holo acyl carrier protein (holo-acp) from helicobacter pylori
5H9H: “Holo acyl carrier protein (holo-acp) from helicobacter pylori”. X-ray diffraction, 4 pockets (best druggability 0.56). MolNFT v1 #120726 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5H9H
- Type
- protein
- Length
- 223 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acyl carrier protein
- UniProt
- B6JLE2
- Pockets
- 4 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 60% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Acyl carrier protein | protein | 74 | 62% helix, 3% strand | B6JLE2 |
| B | Acyl carrier protein | protein | 75 | 59% helix, 3% strand | B6JLE2 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 328 | 0.56 | 0.75 | 30 | empty |
| 2 | 109 | 0.37 | 0.74 | 16 | empty |
| 3 | 53 | 0.27 | 0.74 | 16 | empty |
| 4 | 51 | 0.25 | 0.73 | 11 | empty |
Interfaces
3 interfaces between chains.
- A–B · 323 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 316 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 41 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 3 modified (nonstandard).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6JLE2
- Elsewhere: RCSB PDB 5H9H · PDBe 5H9H · UniProt B6JLE2
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