MolNFT v1 · #120659 · protein

Crystal structure of mn-derivative drcpdase

5H7F · RNA 2',3'-cyclic phosphodiesterase: “Crystal structure of mn-derivative drcpdase”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.64). MolNFT v1 #120659 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5H7F
Type: protein
Length: 182 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA 2',3'-cyclic phosphodiesterase
EC: 3.1.4.-
UniProt: O32509
Ligands: SO4
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA 2',3'-cyclic phosphodiesterase (EC 3.1.4.-)	protein	182	24% helix, 38% strand	O32509

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	416	0.64	0.78	35	SO4

Compared structures

5H7F · Crystal Structure of Mn-derivative drCPDase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O32509
Elsewhere: RCSB PDB 5H7F · PDBe 5H7F · UniProt O32509

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