MolNFT v1 · #120627 · protein
Crystal structure of gbs camp factor
5H6I · Protein B: “Crystal structure of gbs camp factor”. X-ray diffraction, 2 ligands (SO4, CL), 6 pockets (best druggability 0.74). MolNFT v1 #120627 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5H6I
- Type
- protein
- Length
- 629 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein B
- UniProt
- P09879
- Ligands
- SO4, CL
- Pockets
- 6 · best druggability 0.74
Structure
x-ray diffraction · 3 distinct chains · 74% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein B | protein | 215 | 76% helix, 2% strand | P09879 |
| B | Protein B | protein | 213 | 73% helix, 2% strand | P09879 |
| C | Protein B | protein | 201 | 74% helix, 2% strand | P09879 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 797 | 0.74 | 0.79 | 72 | empty |
| 2 | 79 | 0.55 | 0.86 | 17 | empty |
| 3 | 140 | 0.54 | 0.81 | 22 | empty |
| 4 | 191 | 0.48 | 0.75 | 19 | empty |
| 5 | 160 | 0.45 | 0.76 | 19 | empty |
Interfaces
2 interfaces between chains.
- B–C · 572 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 342 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09879
- Elsewhere: RCSB PDB 5H6I · PDBe 5H6I · UniProt P09879
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