MolNFT v1 · #120576 · protein
Crystal structure of a rhamnose-binding lectin sul-I from the toxopneustid sea urchin toxopneustes pileolus
5H4S · L-rhamnose-binding lectin: “Crystal structure of a rhamnose-binding lectin sul-I from the toxopneustid sea urchin toxopneustes pileolus”. X-ray diffraction, 2 ligands (RAM, PO4), 3 pockets (best druggability 0.55). MolNFT v1 #120576…
- PDB
- 5H4S
- Type
- protein
- Length
- 284 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-rhamnose-binding lectin
- UniProt
- A0A090BWT0
- Ligands
- RAM, PO4
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-rhamnose-binding lectin | protein | 284 | 14% helix, 39% strand | A0A090BWT0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 229 | 0.55 | 0.78 | 44 | empty |
| 2 | 122 | 0.39 | 0.75 | 19 | empty |
| 3 | 82 | 0.38 | 0.77 | 19 | empty |
Modifications
Observed in the structure: 13 disulfide (disulfide).
Compared structures
- 5H4S · Crystal structure of a rhamnose-binding lectin SUL-I from the toxopneustid sea urchin… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A090BWT0
- Elsewhere: RCSB PDB 5H4S · PDBe 5H4S · UniProt A0A090BWT0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.