MolNFT v1 · #120553 · protein

Crystal structure of a type IV secretion system component cagx in helicobacter pylori

5H3V · CAG8: “Crystal structure of a type IV secretion system component cagx in helicobacter pylori”. X-ray diffraction, 2 pockets (best druggability 0.30). MolNFT v1 #120553 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5H3V
Type: protein
Length: 206 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CAG8
UniProt: Q6VRS3
Pockets: 2 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	CAG8	protein	103	6% helix, 43% strand	Q6VRS3

Ligands and binding sites

IPA · Isopropyl alcohol · additive · 2 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.30	0.75	14	empty
2	67	0.27	0.72	16	empty

Interfaces

1 interface between chains.

A–B · 256 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

5H3V · Crystal structure of a Type IV Secretion System Component CagX in Helicobacter pylori · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6VRS3
Elsewhere: RCSB PDB 5H3V · PDBe 5H3V · UniProt Q6VRS3

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