MolNFT v1 · #120489 · protein
CYP153D17 from sphingomonas sp. pamc 26605
5H1Z · Putative cyp alkane hydroxylase CYP153D17: “CYP153D17 from sphingomonas sp. pamc 26605”. X-ray diffraction, 2 ligands (HEM, D12), 5 pockets (best druggability 0.86). MolNFT v1 #120489 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5H1Z
- Type
- protein
- Length
- 400 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative cyp alkane hydroxylase CYP153D17
- Ligands
- HEM, D12
- Pockets
- 5 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative cyp alkane hydroxylase CYP153D17 | protein | 400 | 46% helix, 10% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 763 | 0.86 | 0.89 | 82 | HEM, D12 |
| 2 | 70 | 0.65 | 0.92 | 17 | empty |
| 3 | 71 | 0.50 | 0.84 | 17 | empty |
| 4 | 62 | 0.44 | 0.83 | 14 | empty |
| 5 | 50 | 0.24 | 0.72 | 14 | empty |
Compared structures
- 5H1Z · CYP153D17 from Sphingomonas sp. PAMC 26605 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5H1Z · PDBe 5H1Z
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