MolNFT v1 · #120487 · protein
Crystal structure of rat NUP62 coiled-coil motif
5H1X · Nuclear pore glycoprotein P62: “Crystal structure of rat NUP62 coiled-coil motif”. X-ray diffraction, 1 pocket (best druggability 0.32). MolNFT v1 #120487 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5H1X
- Type
- protein
- Length
- 146 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nuclear pore glycoprotein P62
- UniProt
- P17955
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 3 distinct chains · 90% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear pore glycoprotein P62 | protein | 48 | 85% helix, 0% strand | P17955 |
| B | Nuclear pore glycoprotein P62 | protein | 51 | 92% helix, 0% strand | P17955 |
| C | Nuclear pore glycoprotein P62 | protein | 47 | 94% helix, 0% strand | P17955 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.32 | 0.73 | 13 | empty |
Interfaces
3 interfaces between chains.
- B–C · 974 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 933 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 851 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17955
- Elsewhere: RCSB PDB 5H1X · PDBe 5H1X · UniProt P17955
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