MolNFT v1 · #120469 · protein

Crystal structure of C-terminal of RHOGDI2

5H1D · Rho GDP-dissociation inhibitor 2: “Crystal structure of C-terminal of RHOGDI2”. X-ray diffraction, 1 pocket (best druggability 0.42). MolNFT v1 #120469 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5H1D
Type: protein
Length: 135 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rho GDP-dissociation inhibitor 2
UniProt: P52566
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 58% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rho GDP-dissociation inhibitor 2	protein	135	5% helix, 58% strand	P52566

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	93	0.42	0.78	23	empty

Compared structures

5H1D · Crystal structure of C-terminal of RhoGDI2 · the same entry in another collection · chain A against A, TM-score 1.00
P52566 · AlphaFold monomer V2.0 prediction for rho GDP-dissociation inhibitor 2 (P52566) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52566
Elsewhere: RCSB PDB 5H1D · PDBe 5H1D · UniProt P52566

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