MolNFT v1 · #120457 · protein

Crystal structure of zebrafish SEC10

5H11 · Uncharacterized protein: “Crystal structure of zebrafish SEC10”. X-ray diffraction, 1 ligand (BR), 1 pocket (best druggability 0.32). MolNFT v1 #120457 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5H11
Type: protein
Length: 494 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: B0BLY0
Ligands: BR
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	494	72% helix, 0% strand	B0BLY0

Ligands and binding sites

BR · Bromide ion · ion · 10 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	62	0.32	0.76	18	empty

Compared structures

5H11 · Crystal structure of Zebrafish Sec10 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0BLY0
Elsewhere: RCSB PDB 5H11 · PDBe 5H11 · UniProt B0BLY0

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