MolNFT v1 · #120429 · protein

Crystal structure of an ADP-ribosylating toxin beca of a novel binary enterotoxin of C. perfringens with NADH

5H04 · Binary enterotoxin of clostridium perfringens component a: “Crystal structure of an ADP-ribosylating toxin beca of a novel binary enterotoxin of C. perfringens with NADH”. X-ray diffraction, 1 ligand (NAI), 3 pockets (best…

PDB: 5H04
Type: protein
Length: 419 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Binary enterotoxin of clostridium perfringens component a
UniProt: X5I2D7
Ligands: NAI
Pockets: 3 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Binary enterotoxin of clostridium perfringens component a	protein	419	36% helix, 26% strand	X5I2D7

Ligands and binding sites

NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	338	0.62	0.78	33	NAI
2	283	0.56	0.77	55	empty
3	201	0.50	0.76	28	empty

Compared structures

5H04 · Crystal structure of an ADP-ribosylating toxin BECa of a novel binary enterotoxin of C.… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt X5I2D7
Elsewhere: RCSB PDB 5H04 · PDBe 5H04 · UniProt X5I2D7

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