MolNFT v1 · #120379 · protein
Crystal structure of enzbleach xylanase T28C+T60C mutant with three N- teminal residue truncation
5GYG · Endo-1,4-beta-xylanase: “Crystal structure of enzbleach xylanase T28C+T60C mutant with three N- teminal residue truncation”. X-ray diffraction, 3 pockets (best druggability 0.72). MolNFT v1 #120379 on GenesisL1: 3D structure…
- PDB
- 5GYG
- Type
- protein
- Length
- 544 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-xylanase
- EC
- 3.2.1.8
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Endo-1,4-beta-xylanase (EC 3.2.1.8) | protein | 272 | 10% helix, 45% strand | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 603 | 0.72 | 0.80 | 61 | empty |
| 2 | 181 | 0.48 | 0.76 | 27 | empty |
| 3 | 180 | 0.48 | 0.76 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 335 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5GYG · Crystal structure of ENZbleach xylanase T28C+T60C mutant with three N-teminal residue… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5GYG · PDBe 5GYG
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