MolNFT v1 · #120372 · protein
Crystal structure of enzbleach xylanase A74C+G84C mutant
5GY9 · Endo-1,4-beta-xylanase: “Crystal structure of enzbleach xylanase A74C+G84C mutant”. X-ray diffraction, 4 pockets (best druggability 0.70). MolNFT v1 #120372 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5GY9
- Type
- protein
- Length
- 549 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-xylanase
- EC
- 3.2.1.8
- Pockets
- 4 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase (EC 3.2.1.8) | protein | 274 | 10% helix, 46% strand | — |
| B | Endo-1,4-beta-xylanase (EC 3.2.1.8) | protein | 275 | 10% helix, 45% strand | — |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 621 | 0.70 | 0.78 | 66 | empty |
| 2 | 211 | 0.52 | 0.77 | 31 | empty |
| 3 | 100 | 0.46 | 0.80 | 18 | empty |
| 4 | 93 | 0.32 | 0.72 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 600 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 5GY9 · Crystal structure of ENZbleach xylanase A74C+G84C mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5GY9 · PDBe 5GY9
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