MolNFT v1 · #120338 · protein

Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 1.1 mgy (1ST measurement)

5GX1 · Luciferin regenerating enzyme: “Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated…”. X-ray diffraction, 2 ligands (HG, MG), 2 pockets (best druggability 0.75). MolNFT v1…

PDB: 5GX1
Type: protein
Length: 307 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Luciferin regenerating enzyme
UniProt: Q95YI4
Ligands: HG, MG
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Luciferin regenerating enzyme	protein	307	6% helix, 51% strand	Q95YI4

Ligands and binding sites

HG · Mercury (II) ion · metal · 2 copies · chains A
MG · Magnesium ion · metal · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	173	0.75	0.91	35	empty
2	258	0.64	0.82	29	MPD

Compared structures

5GX1 · Luciferin-regenerating enzyme collected with serial synchrotron rotational… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q95YI4
Elsewhere: RCSB PDB 5GX1 · PDBe 5GX1 · UniProt Q95YI4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.