MolNFT v1 · #120305 · protein

Crystal structure of salt protein from oryza sativa

5GVY · Salt stress-induced protein: “Crystal structure of salt protein from oryza sativa”. X-ray diffraction, 1 ligand (MAN). MolNFT v1 #120305 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5GVY
Type: protein
Length: 290 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Salt stress-induced protein
UniProt: A2WPN7
Ligands: MAN

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 67% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Salt stress-induced protein	protein	145	0% helix, 67% strand	A2WPN7

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 945 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

5GVY · Crystal structure of SALT protein from Oryza sativa · the same entry in another collection · chain A against A, TM-score 1.00
A2WPN7 · AlphaFold monomer V2.0 prediction for salt stress-induced protein (A2WPN7) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A2WPN7
Elsewhere: RCSB PDB 5GVY · PDBe 5GVY · UniProt A2WPN7

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