MolNFT v1 · #120275 · protein

Crystal structure of the membrane-proximal domain of mouse lysosome- associated membrane protein 1 (lamp-1)

5GV0 · Lysosome-associated membrane glycoprotein 1: “Crystal structure of the membrane-proximal domain of mouse lysosome- associated membrane protein 1 (lamp-1)”. X-ray diffraction, 2 ligands (NAG, SO4). MolNFT v1 #120275 on GenesisL1: 3D…

PDB: 5GV0
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysosome-associated membrane glycoprotein 1
UniProt: P11438
Ligands: NAG, SO4

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 65% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysosome-associated membrane glycoprotein 1	protein	162	2% helix, 65% strand	P11438

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 glycan, 2 disulfide (N-glycosylation, disulfide).

Compared structures

5GV0 · Crystal structure of the membrane-proximal domain of mouse lysosome-associated membrane… · the same entry in another collection · chain A against A, TM-score 1.00
P11438 · AlphaFold monomer V2.0 prediction for lysosome-associated membrane glycoprotein 1 (P11438) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11438
Elsewhere: RCSB PDB 5GV0 · PDBe 5GV0 · UniProt P11438

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