MolNFT v1 · #120268 · protein
Crystal structure of asch from zymomonas mobilis
5GUQ · Helix-turn-helix domain-containing protein: “Crystal structure of asch from zymomonas mobilis”. X-ray diffraction, 9 pockets (best druggability 0.62). MolNFT v1 #120268 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5GUQ
- Type
- protein
- Length
- 578 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Helix-turn-helix domain-containing protein
- UniProt
- A0A0H3G0N3
- Pockets
- 9 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | Helix-turn-helix domain-containing protein | protein | 143 | 31% helix, 35% strand | A0A0H3G0N3 |
| C | Helix-turn-helix domain-containing protein | protein | 149 | 31% helix, 34% strand | A0A0H3G0N3 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 480 | 0.62 | 0.76 | 39 | empty |
| 2 | 157 | 0.51 | 0.78 | 18 | empty |
| 3 | 141 | 0.48 | 0.78 | 18 | empty |
| 4 | 136 | 0.47 | 0.77 | 17 | empty |
| 5 | 93 | 0.45 | 0.80 | 26 | empty |
Interfaces
5 interfaces between chains.
- A–D · 668 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 657 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 356 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 102 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 53 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5GUQ · Crystal structure of ASCH from Zymomonas mobilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3G0N3
- Elsewhere: RCSB PDB 5GUQ · PDBe 5GUQ · UniProt A0A0H3G0N3
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