MolNFT v1 · #120236 · protein
The agonist-free structure of human ppargamma ligand binding domain in the presence of the src-1 coactivator peptide
5GTP · Peroxisome proliferator-activated receptor gamma: “The agonist-free structure of human ppargamma ligand binding domain in the presence of the src-1 coactivator…”. X-ray diffraction, 1 ligand (MYR), 1 pocket (best druggability 0.82).…
- PDB
- 5GTP
- Type
- protein
- Length
- 272 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peroxisome proliferator-activated receptor gamma; Nuclear receptor coactivator 1
- UniProt
- P37231
- Ligands
- MYR
- Pockets
- 1 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peroxisome proliferator-activated receptor gamma | protein | 261 | 67% helix, 5% strand | P37231 |
| B | Nuclear receptor coactivator 1 | protein | 11 | 73% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 433 | 0.82 | 0.89 | 50 | MYR, GOL |
Interfaces
1 interface between chains.
- A–B · 665 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5GTP · The agonist-free structure of human PPARgamma ligand binding domain in the presence of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37231
- Elsewhere: RCSB PDB 5GTP · PDBe 5GTP · UniProt P37231
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