MolNFT v1 · #120212 · protein

Crystal structure of cbpa from L. salivarius ren

5GT1 · Choline binding protein a: “Crystal structure of cbpa from L. salivarius ren”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.33). MolNFT v1 #120212 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5GT1
Type: protein
Length: 153 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Choline binding protein a
UniProt: A0A0F7PV22
Ligands: ZN
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Choline binding protein a	protein	153	15% helix, 35% strand	A0A0F7PV22

Ligands and binding sites

ZN · Zinc ion · metal · chains A
ACT · Acetate ion · additive · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.33	0.78	16	ZN

Compared structures

5GT1 · crystal structure of cbpa from L. salivarius REN · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0F7PV22
Elsewhere: RCSB PDB 5GT1 · PDBe 5GT1 · UniProt A0A0F7PV22

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