MolNFT v1 · #120154 · protein

Crystal structure of pxy-TDIF/CLE41

5GR9 · Leucine-rich repeat receptor-like protein kinase tdr: “Crystal structure of pxy-TDIF/CLE41”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #120154 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5GR9
Type: protein
Length: 607 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Leucine-rich repeat receptor-like protein kinase tdr; TDIF/CLE41
EC: 2.7.11.1
UniProt: Q9FII5
Ligands: NAG

Structure

x-ray diffraction · 2 distinct chains · 19% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Leucine-rich repeat receptor-like protein kinase tdr (EC 2.7.11.1)	protein	595	19% helix, 23% strand	Q9FII5
C	TDIF/CLE41	protein	12	0% helix, 0% strand	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

B–C · 813 Å² buried · 15 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 glycan, 4 disulfide, 2 modified (N-glycosylation, disulfide, hydroxylation).

Compared structures

5GR9 · Crystal structure of PXY-TDIF/CLE41 · the same entry in another collection · chain B against B, TM-score 1.00
Q9FII5 · AlphaFold monomer V2.0 prediction for leucine-rich repeat receptor- like protein kinase… · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9FII5
Elsewhere: RCSB PDB 5GR9 · PDBe 5GR9 · UniProt Q9FII5

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