MolNFT v1 · #120117 · protein

Crystal structure of the epithiospecifier protein, esp from arabidopsis thaliana

5GQ0: “Crystal structure of the epithiospecifier protein, esp from arabidopsis thaliana”. X-ray diffraction, 7 pockets (best druggability 0.63). MolNFT v1 #120117 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5GQ0
Type: protein
Length: 668 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Epithiospecifier protein
UniProt: Q8RY71
Pockets: 7 · best druggability 0.63

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Epithiospecifier protein	protein	330	0% helix, 50% strand	Q8RY71
A	Epithiospecifier protein	protein	338	1% helix, 47% strand	Q8RY71

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	217	0.63	0.82	27	empty
2	227	0.61	0.81	32	empty
3	225	0.55	0.78	32	empty
4	107	0.51	0.82	21	empty
5	139	0.50	0.79	24	empty

Interfaces

1 interface between chains.

B–A · 895 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

5GQ0 · Crystal structure of the Epithiospecifier Protein, ESP from Arabidopsis thaliana · the same entry in another collection · chain B against B, TM-score 1.00
Q8RY71 · AlphaFold monomer V2.0 prediction for epithiospecifier protein (Q8RY71) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8RY71
Elsewhere: RCSB PDB 5GQ0 · PDBe 5GQ0 · UniProt Q8RY71

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