MolNFT v1 · #120063 · protein

Solution structure of NEDD8 from trypanosoma brucei

5GO0 · Ubiquitin, putative: “Solution structure of NEDD8 from trypanosoma brucei”. Solution nmr, 1 pocket (best druggability 0.47). MolNFT v1 #120063 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5GO0
Type: protein
Length: 78 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin, putative
UniProt: Q584D3
Pockets: 1 · best druggability 0.47

Structure

solution nmr · 1 distinct chain · 24% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin, putative	protein	78	24% helix, 27% strand	Q584D3

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	105	0.47	0.80	20	empty

Compared structures

5GO0 · Solution structure of nedd8 from Trypanosoma brucei · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q584D3
Elsewhere: RCSB PDB 5GO0 · PDBe 5GO0 · UniProt Q584D3

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