MolNFT v1 · #120042 · protein

Crystal structure of phytophthora. sojae PSR2

5GNC · AVH146: “Crystal structure of phytophthora. sojae PSR2”. X-ray diffraction, 4 pockets (best druggability 0.67). MolNFT v1 #120042 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5GNC
Type: protein
Length: 597 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: AVH146
UniProt: E0W4V5
Pockets: 4 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	AVH146	protein	597	72% helix, 0% strand	E0W4V5

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.67	0.95	17	empty
2	71	0.38	0.78	17	empty
3	65	0.31	0.75	18	empty
4	62	0.30	0.75	18	empty

Modifications

Observed in the structure: 13 modified (engineered).

Compared structures

5GNC · Crystal structure of Phytophthora. sojae PSR2 · the same entry in another collection · chain A against A, TM-score 1.00
E0W4V5 · AlphaFold monomer V2.0 prediction for rxlr effector protein PSR2 (E0W4V5) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E0W4V5
Elsewhere: RCSB PDB 5GNC · PDBe 5GNC · UniProt E0W4V5

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