MolNFT v1 · #120017 · protein

Crystal structure of grasp domain of GRASP55 with N terminal extra residues

5GML · Golgi reassembly-stacking protein 2: “Crystal structure of grasp domain of GRASP55 with N terminal extra residues”. X-ray diffraction, 7 pockets (best druggability 0.64). MolNFT v1 #120017 on GenesisL1: 3D structure, binding sites…

PDB: 5GML
Type: protein
Length: 446 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Golgi reassembly-stacking protein 2
UniProt: Q99JX3
Pockets: 7 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Golgi reassembly-stacking protein 2	protein	223	9% helix, 30% strand	Q99JX3

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	210	0.64	0.83	41	empty
2	132	0.56	0.83	23	empty
3	146	0.54	0.81	24	empty
4	354	0.53	0.74	33	empty
5	91	0.39	0.76	19	empty

Interfaces

1 interface between chains.

A–B · 1259 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

5GML · Crystal Structure of GRASP Domain of GRASP55 with N terminal extra residues · the same entry in another collection · chain A against A, TM-score 1.00
Q99JX3 · AlphaFold monomer V2.0 prediction for golgi reassembly-stacking protein 2 (Q99JX3) · a predicted model of the same protein · chain A against A, TM-score 0.87

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99JX3
Elsewhere: RCSB PDB 5GML · PDBe 5GML · UniProt Q99JX3

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