MolNFT v1 · #120005 · protein
Crystal structure of a glycoside hydrolase in complex with cellobiose
5GM9 · Glycoside hydrolase family 45 protein: “Crystal structure of a glycoside hydrolase in complex with cellobiose”. X-ray diffraction, 2 ligands (BGC, GLC), 1 pocket (best druggability 0.58). MolNFT v1 #120005 on GenesisL1: 3D…
- PDB
- 5GM9
- Type
- protein
- Length
- 213 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycoside hydrolase family 45 protein
- UniProt
- G2QVH7
- Ligands
- BGC, GLC
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycoside hydrolase family 45 protein | protein | 213 | 21% helix, 27% strand | G2QVH7 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 3 copies · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 193 | 0.58 | 0.81 | 39 | GLC, BGC |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 5GM9 · Crystal structure of a glycoside hydrolase in complex with cellobiose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G2QVH7
- Elsewhere: RCSB PDB 5GM9 · PDBe 5GM9 · UniProt G2QVH7
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