MolNFT v1 · #119970 · protein

Crystal structure of the class a beta-lactamase penl

5GL9: “Crystal structure of the class a beta-lactamase penl”. X-ray diffraction, 2 pockets (best druggability 0.38). MolNFT v1 #119970 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5GL9
Type: protein
Length: 268 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-lactamase
EC: 3.5.2.6
UniProt: A0A2Z4SUB5
Pockets: 2 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-lactamase (EC 3.5.2.6)	protein	268	45% helix, 21% strand	A0A2Z4SUB5

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.38	0.80	21	empty
2	98	0.35	0.75	18	empty

Compared structures

5GL9 · Crystal structure of the class A beta-lactamase PenL · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2Z4SUB5
Elsewhere: RCSB PDB 5GL9 · PDBe 5GL9 · UniProt A0A2Z4SUB5

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