MolNFT v1 · #119953 · protein
Crystal structure of the N-terminal domain of caseinolytic protease associated chaperone clpd from arabidopsis thaliana
5GKM · AT5G51070/K3K7_27: “Crystal structure of the N-terminal domain of caseinolytic protease associated chaperone clpd from…”. X-ray diffraction, 1 pocket (best druggability 0.32). MolNFT v1 #119953 on GenesisL1: 3D structure, binding…
- PDB
- 5GKM
- Type
- protein
- Length
- 296 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AT5G51070/K3K7_27
- UniProt
- Q94C10
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 2 distinct chains · 64% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AT5G51070/K3K7_27 | protein | 154 | 62% helix, 3% strand | Q94C10 |
| B | AT5G51070/K3K7_27 | protein | 142 | 65% helix, 3% strand | Q94C10 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.32 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 726 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5GKM · Crystal structure of the N-terminal Domain of Caseinolytic protease associated chaperone… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q94C10
- Elsewhere: RCSB PDB 5GKM · PDBe 5GKM · UniProt Q94C10
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.