MolNFT v1 · #119906 · protein
Putative acyl-CoA dehydrogenase
5GJ7 · Acyl-CoA dehydrogenase type 2 domain protein: “Putative acyl-CoA dehydrogenase”. X-ray diffraction, 5 pockets (best druggability 0.75). MolNFT v1 #119906 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5GJ7
- Type
- protein
- Length
- 776 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acyl-CoA dehydrogenase type 2 domain protein
- UniProt
- C8WV06
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Acyl-CoA dehydrogenase type 2 domain protein | protein | 388 | 59% helix, 14% strand | C8WV06 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 866 | 0.75 | 0.78 | 87 | empty |
| 2 | 810 | 0.74 | 0.78 | 94 | empty |
| 3 | 167 | 0.50 | 0.78 | 18 | empty |
| 4 | 127 | 0.45 | 0.77 | 19 | empty |
| 5 | 129 | 0.44 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1329 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 5GJ7 · putative Acyl-CoA dehydrogenase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8WV06
- Elsewhere: RCSB PDB 5GJ7 · PDBe 5GJ7 · UniProt C8WV06
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