MolNFT v1 · #119843 · protein
X-ray crystal structure of periplasmic desferal binding protein fhud from vibrio cholerae
5GGY · IRON(III) ABC transporter, periplasmic iron-compound…: “X-ray crystal structure of periplasmic desferal binding protein fhud from vibrio cholerae”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.69). MolNFT v1…
- PDB
- 5GGY
- Type
- protein
- Length
- 533 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- IRON(III) ABC transporter, periplasmic iron-compound- binding protein
- UniProt
- A0A0H3AJ03
- Ligands
- CL
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | IRON(III) ABC transporter, periplasmic iron-compound- binding protein | protein | 267 | 43% helix, 17% strand | A0A0H3AJ03 |
| N | IRON(III) ABC transporter, periplasmic iron-compound- binding protein | protein | 266 | 45% helix, 17% strand | A0A0H3AJ03 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 649 | 0.69 | 0.77 | 68 | empty |
| 2 | 85 | 0.36 | 0.75 | 20 | CL |
Interfaces
1 interface between chains.
- A–N · 428 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5GGY · X-ray crystal structure of Periplasmic Desferal binding protein FhuD from Vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3AJ03
- Elsewhere: RCSB PDB 5GGY · PDBe 5GGY · UniProt A0A0H3AJ03
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