MolNFT v1 · #119738 · protein

Structure of the pyrococcus furiosus esterase PF2001 with space group P3121

5G59: “Structure of the pyrococcus furiosus esterase PF2001 with space group P3121”. X-ray diffraction, 1 ligand (HG), 2 pockets (best druggability 0.81). MolNFT v1 #119738 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5G59
Type: protein
Length: 274 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Esterase
UniProt: Q8TZJ1
Ligands: HG
Pockets: 2 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Esterase	protein	274	43% helix, 18% strand	Q8TZJ1

Ligands and binding sites

HG · Mercury (II) ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	349	0.81	0.90	40	empty
2	94	0.40	0.77	21	empty

Compared structures

5G59 · Structure of the Pyrococcus Furiosus Esterase Pf2001 with space group P3121 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8TZJ1
Elsewhere: RCSB PDB 5G59 · PDBe 5G59 · UniProt Q8TZJ1

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