MolNFT v1 · #119597 · protein
Pseudomonas aeruginosa hdah unliganded.
5G0Y: “Pseudomonas aeruginosa hdah unliganded.”. X-ray diffraction, 2 ligands (K, ZN), 5 pockets (best druggability 0.81). MolNFT v1 #119597 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5G0Y
- Type
- protein
- Length
- 749 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hdah
- UniProt
- Q9HXM1
- Ligands
- K, ZN
- Pockets
- 5 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hdah | protein | 372 | 41% helix, 17% strand | Q9HXM1 |
| B | Hdah | protein | 377 | 41% helix, 17% strand | Q9HXM1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 335 | 0.81 | 0.91 | 48 | empty |
| 2 | 151 | 0.66 | 0.87 | 35 | empty |
| 3 | 150 | 0.65 | 0.87 | 33 | empty |
| 4 | 58 | 0.33 | 0.77 | 15 | empty |
| 5 | 50 | 0.27 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 2199 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXM1
- Elsewhere: RCSB PDB 5G0Y · PDBe 5G0Y · UniProt Q9HXM1
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