MolNFT v1 · #119558 · protein
Designed tpr protein M4N
5FZQ: “Designed tpr protein M4N”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.69). MolNFT v1 #119558 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5FZQ
- Type
- protein
- Length
- 317 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Designed tpr protein
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Designed tpr protein | protein | 106 | 81% helix, 0% strand | — |
| B | Designed tpr protein | protein | 105 | 82% helix, 0% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 7 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 746 | 0.69 | 0.76 | 55 | empty |
| 2 | 80 | 0.36 | 0.76 | 13 | empty |
| 3 | 54 | 0.28 | 0.75 | 15 | empty |
Interfaces
3 interfaces between chains.
- A–B · 917 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 515 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 384 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5FZQ · Designed TPR Protein M4N · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5FZQ · PDBe 5FZQ
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